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MICR 223: Infection and Immunity

Second Semester - 18 points

Course prescription

The epidemiology and pathogenesis of infectious diseases, the response of the immune system to microbial antigens, and how the response is measured.

Course overview

		Microbes and the immune response exist in a delicate balance. The immune response is essential for fighting infection by microbial pathogens; however, these pathogens evolve rapidly to develop immune evasion mechanisms.  This paper includes specific discussion on current global disease threats such as HIV, influenza, MRSA, tuberculosis and E. coli 0157:H7. This course in Infection and Immunity aims to integrate microbiology and immunology to:
		Explain the mechanisms microbes have evolved to infect cells, individuals and communities.  Provide a broad understanding of fundamental immunology, including innate and adaptive immune systems at a cellular and molecular level  Provide basic practical experience with the instrumentation and methodology important in a modern diagnostic laboratory and how these skills can be applied to human health and disease.
		This paper is ideal if you are interested in Immunology or Medical Microbiology, and want to understand the interplay between infection and protection.

Lecture course overview

The MICR 223 lecture course will introduce you to the following topics:

Module 1: Epidemiology of Infectious Diseases and Principles of Antimicrobial Therapy

1. Introduction to epidemiology
2. Epidemiological tools: subtyping methods
3. Studying historical pandemics: what have we learned?
4. Acute, chronic, latent and silent infections
5. Principles of antimicrobial therapy
6. Are we moving towards the post-antibiotic era?

Module 2: Sources of Infection and Preventing Transmission

7. Zoonoses
8. Environmental pathogens
9. Transmission and prevention
10. Hospital and community-acquired infections

Module 4: Microbial Virulence Mechanisms

11. Microbial adhesion
12. Microbial invasion
13. Microbial intracellular survival
14. Bacterial toxins
15. Medical importance of biofilms

Module 5: Innate Immune Responses

16. Introduction to immunity
17. Recognition of pathogens
18. The inflammasome and inflammatory mediators

Module 6: Adaptive Immunity I

19. Generation of lymphocyte diversity
20. Lymphocyte activation
21. T cell subsets I (cellular)
22. T cell subsets II (molecular)

Module 7: Adaptive Immunity II

23. Lymphocyte regulation
24. B cell subsets and functions
25. B and T cell memory

Module 8:  Immunology in Health and Disease 

26. Vaccines I (introduction)
27. Vaccines II (HIV, malaria, TB)
28. Autoimmunity and tolerance
29. Immunodiagnostics
30. Immunology Revision

Module 9: Immune Response to Infection

31. Immune response to viral infection
32. Immune response to bacterial infection

Lab course overview

The MICR 223 labs aim to introduce you to concepts covered in the lecture course at a practical level. The 6 labs in MICR 223 cover:

• Lab 1: Neonatal meningitis
• Lab 2: Genetic analysis to investigate outbreaks
• Lab 3: Influenza
• Lab 4: Eukaryotic pathogens and immune deficiency
• Lab 5: Comparison of virulence factors in staphylococci
• Lab 6: Tuberculosis diagnosis

Attendance at all 6 laboratory sessions is compulsory

Techniques and skills you will learn in the lab course:

• Culture of bacteria
• Haemadsorption
• Immunochromatography
• Yeast identification
• Phagocyte function
• Biofilms
• Coagulation and agglutination
• Antibody binding
• Specific bacterial staining
• ELISA
• Lymphocyte proliferation
• DNA fingerprinting

Assessment

1. Lecture and lab test 1 (15%) 
2. Lecture and lab test 2 (15%)
3. A 3-hr final exam (70%)

Course prerequisites

Prerequisites:

HUBS 191 & 90 further points

Recommended preparation:

MICR 221

Timetable

Lectures 11:00am

Wednesday (from semester week 7 onwards only)

Thursday

Friday 

  

Labs

Semester weeks 2, 3, 4 and 8, 9, 10

Textbooks

Recommended texts:

Prescott's Microbiology by Wiley, Sherwood and Woolverton, 10th edition, 2017, McGraw-Hill Publishers

Kuby Immunology by Owen, Punt and Stranford, 7th edition, 2013, Macmillan Publishers

Both are available at the Medical and Science libraries

Teaching staff

• Associate Professor Joanna Kirman (Convenor)
• Associate Professor Keith Ireton
• Megan Hall
• Associate Professor Roslyn Kemp
• Dr Warren McBurney
• Dr Xochitl Morgan

For more information

View the details of this paper on the University of Otago website

Students are encouraged to contact staff by email to make arrangements for a time to discuss course-related matters.

For more information on this course, please contact Associate Professor Joanna Kirman.